Entry: limmaGUI
Aliases: limmaGUI GetComponentsToExportInHTMLreport HTMLplotUsingFunction ExportTopTable ExportHTMLreport TryReadImgProcFile Require TclRequire getPackageVersion initGlobals deleteItemFromList SetLayoutParameters OpenGALFile OpenTargetsFile OpenSpotTypesFile GetImageProcessingFileType ReadImageProcessingFiles tclArrayVar GetDesignOrContrasts SimplifyContrastsExpression GetRNATypesFrom.ContrastsFromDropDowns.String GetParameterNames GetReducedDuplicateSpacing GetContrastsParameterizationNames GetSpotTypesIncludedNames HowManyDups ViewDesignOrContrastsMatrixInTable ViewDesignOrContrastsMatrixAsPairs ViewExistingContrastsParameterization ViewExistingParameterization CreateNewParameterization ViewRNATargets nstrstr strstr ViewSpotTypes ComputeContrasts ComputeLinearModel ChooseParameterization GetCoef showTopTable GetSpotTypesForLinearModel GetSlideNum GetDEcutoff UpdateSpotTypesStatus ChooseEbayesStatistic ChooseSpotType GetWtAreaParams GetWtFlagParams evalRcode OpenGALandTargetsandSpotTypesfiles GetlimmaDataSetName GetParameterizationName GetContrastsParameterizationName NewLimmaFile SetWD onExit DeleteParameterization ChooseContrastsParameterization DeleteContrastsParameterization OpenLimmaFile OpenALimmaFile SaveLimmaFile SaveAsLimmaFile AboutLimmaGUI addMenuItem GetMenuName AboutCustomMenu DeleteCustomMenuItem GetCustomMenuItemNum GetWithinArrayNormalizationMethod GetBetweenArrayNormalizationMethod NormalizeNow AboutNormalization GetGeneLabelsOptions MAPlotAvg MMPlot GetNumParametersNoTargets GetParametersAndOrContrasts HeatDiagramDialog HeatDiagramPlot ImageArrayPlotDialog ImageArrayPlot ImportMA ImportMADialog LogOddsPlot DupCorBoxPlot QQTplot MBoxPlot PrintTipGroupMAPlot MAPlot ChoosePlotSymbolByClicking SelectPlotSymbols plotMAColorCoded GetNEWxlim ebayesBoxPlots GetPlotLabels GetPlotTitle GetPlotSize SaveGraphAsJpeg SaveGraphAsPNG SaveGraphAsPostscript SaveGraphAsPDF Resize CopyGraph SetupPlotKeyBindings SetupPlotMenus GetJpegOrPngParams GetJpegOrPngX11Params VennDiagramPlot UpDownOrBoth chooseDir ComputeLinearModelFit CreateTreeAndList ExportAvalues ExportMvalues GetGenePixFlagWeightings imageplotlimmaGUI InitNewParameterization limmaGUIhelp limmaHelp read.marrayTools readGALlimmaGUI showGAL Try vennDiagramlimmaGUI WithinBetweenOrBoth wtflags2 GetBackgroundCorrectionMethod GetlmFitMethod lmFitMethodHelp BChelp onDestroy GetPValueCutoff fixSeps GetImageAnalysisColumnHeadings GetLowessType PlotOptions
Keywords: IO
Description: Graphical User Interface for the limma microarray package
URL: ../../../library/limmaGUI/html/limmaGUI.html
