limmaExample            package:ideogram            R Documentation

_d_a_t_a _i_n_c_l_u_d_e_d _f_o_r _i_d_e_o_g_r_a_m _v_i_g_n_e_t_t_e

_D_e_s_c_r_i_p_t_i_o_n:

     This data is included for use in the ideogram vignette.

_U_s_a_g_e:

     data(limmaExample)

_D_e_t_a_i_l_s:

     "t" was created with the topTable function.

     "vai.chr" is a chromLocation object that was created with the
     buildChromLocation function.

_S_o_u_r_c_e:

     The data was used with permission and published in Haematologica.
     2004 Sep;89(9):1072-81.

_E_x_a_m_p_l_e_s:

     data(limmaExample)
     data <- t$M
     names(data) <- rownames(t)
     colors <- rep("gray",length(data))
     colors[which(data>1)] <- "red"
     colors[which(data<(-1))] <- "blue"
     names(colors) <- names(data)

     mideogram(data,vai.chr,xlim=c(-5,5),col=colors,pch=20)

