DFS                     Depth First Search
aM2bpG                  Coercions between matrix and graph
                        representations
acc-methods             Methods for Accessibility Lists
addEdge                 addEdge
addNode                 addNode
adj-methods             Methods for finding the adjacency list for
                        selected nodes.
apopGraph               KEGG apoptosis pathway graph
asGraphProperty         Generic for converting input to graph property
                        list
aveNumEdges             Calculate the average number of edges in a
                        graph
biocRepos               A graph representing the Bioconductor package
                        repository
boundary                Returns the Boundary between a Graph and a
                        SubGraph
buildRepDepGraph        Functionality to manage repository dependency
                        graphs
calcProb                Calculate the hypergeometric probability of
                        the subgraph's number of edges.
calcSumProb             Calculate the probability that a subgraph has
                        an unusual number of edges.
clearNode               clearNode
clusterGraph-class      Class "clusterGraph"
clusteringCoefficient   Clustering coefficient of a graph
combineNodes            combineNodes
distGraph-class         Class "distGraph"
duplicatedEdges         duplicatedEdges
edgeMatrix              Compute an Edge Matrix or weight vector for a
                        Graph
edgeWeights             Retrieve the edge weights for specified
                        indices.
fromGXL-methods         Methods for GXL manipulations in package graph
ftM2int                 Standard labeling of edges with integers
gEdge-class             Class "gEdge"
gNode-class             Class "gNode"
generalGraph-class      Class "generalGraph" ~~~
graph-class             Class "graph"
graph2SparseM           Coercion methods between graphs and sparse
                        matrices
graphExamples           A List Of Example Graphs
graphH-class            Class "graphH"
graphID-class           Unique Graph Identifications
graphNEL-class          Class "graphNEL"
hashtable               Create a hashtable
hashtable-class         Class "hashtable"
inEdges                 inEdges
integrinMediatedCellAdhesion
                        KEGG Integrin Mediated Cell Adhesion graph
listEdges               List the Edges of a Graph
mostEdges               Find the node in a graph with the greatest
                        number of edges
numEdges                Calculate the number of edges in a graph
numNoEdges              Calculate the number of nodes that have an
                        edge list of NULL
propertyHolder-class    Class "propertyHolder"
randomEGraph            Random Edge Graph
randomGraph             Random Graph
randomNodeGraph         Generate a Graph with specified degree
                        distribution.
removeEdge              removeEdge
removeNode              removeNode
simpleEdge-class        Class "simpleEdge".
subGraph                Create a Subgraph
toDotR                  Methods for Function toDotR, using R to
                        generate a dot serialization
ugraph                  Underlying Graph
validGraph              Test whether graph object is valid
write.tlp               Write a graph object in a file in the Tulip
                        format
