clusterStatisticHyper-class    package:goCluster    R Documentation

_C_l_a_s_s "_c_l_u_s_t_e_r_S_t_a_t_i_s_t_i_c_H_y_p_e_r" _p_r_o_v_i_d_e_s _t_h_e _h_y_p_e_r_g_e_o_m_e_t_r_i_c
_d_i_s_t_r_i_b_u_t_i_o_n _f_o_r _t_h_e _g_o_C_l_u_s_t_e_r _a_n_a_l_y_s_i_s.

_D_e_s_c_r_i_p_t_i_o_n:

     This class provides the hypergeometric distribution for goCluster
     and can be used to identify gene groups that show a significant
     enrichement of similar annotation terms.

_D_e_t_a_i_l_s:

     The class provides a wrapper around the 'evalClusterHyper'
     function. Please read the corresponding documentation for further
     details.

_S_l_o_t_s:

     All slots are described in the documentation of the
     'clusterStatistic-class' and 'clusterModule-class'.

_E_x_t_e_n_d_s:

     Class '"clusterStatistic"', directly. Class '"clusterModule"', by
     class '"clusterStatistic"'.

_M_e_t_h_o_d_s:

     _c_o_n_f_i_g 'signature(object = "clusterStatisticHyper")': interactive
          setup of the class. There are no options that you can set on
          this class.

     _s_e_t_u_p 'signature(object = "clusterStatisticHyper")': returns the
          configuration of the object as a list. Since there are no
          options to this class, this is always an empty list. 

     _s_e_t_u_p<- 'signature(object = "clusterStatisticHyper")':
          non-interactive setup of the class. Not necessary since this
          class has no options.

     _e_x_e_c_u_t_e 'signature(object = "clusterStatisticHyper")': runs the
          statistical analysis on the clustering results provided by
          the parent class. 

     _r_e_s_e_t 'signature(object = "clusterStatisticHyper")': resets the
          results of this class so that the analysis can be run again. 

     _p_r_i_n_t 'signature(object = "clusterStatisticHyper")': This function
          prints some basic information about the content of this
          object. If the object has been executed, it will show the
          number clusters that have been analyzed. 

_A_u_t_h_o_r(_s):

     Gunnar Wrobel, <URL: http://www.gunnarwrobel.de>.

_S_e_e _A_l_s_o:

     'evalClusterHyper', 'goCluster-class', 'clusterModule-class',
     'clusterStatistic-class'

