clusterAnnotation-class      package:goCluster      R Documentation

_C_l_a_s_s "_c_l_u_s_t_e_r_A_n_n_o_t_a_t_i_o_n", _a_n _a_b_s_t_r_a_c_t _c_l_a_s_s _t_h_a_t _r_e_p_r_e_s_e_n_t_s
_f_u_n_c_t_i_o_n_s _f_o_r _a_n_n_o_t_a_t_i_n_g _m_i_c_r_o_a_r_r_a_y _d_a_t_a_s_e_t_s.

_D_e_s_c_r_i_p_t_i_o_n:

     This class provides a skeleton for the linkage of gene IDs or
     other identifiers with annotation information. The annotated data
     can subsequently be analysed using 'goCluster'.

_S_l_o_t_s:

     '_t_y_p_e': Object of class '"character"', a description of the
          annotation type. 

     '_a_n_n_o_s_e_t': Object of class '"list"', the annotation data in a list
          format. Each list element contains annotation data of a
          specific type. information for one specific data ID and holds
          annotation data in the format specified with the slot 'type'.

     Additional slots are described in the documentation of the
     'clusterModule-class'.

_M_e_t_h_o_d_s:

     _c_o_n_f_i_g 'signature(object = "clusterAnnotation")': This function
          does nothing since this is an abstract class.

     _s_e_t_u_p 'signature(object = "clusterAnnotation")': This function
          returns an empty list since this is an abstract class.

     _s_e_t_u_p<- 'signature(object = "clusterAnnotation")': This function
          does nothing since this is an abstract class.

     _e_x_e_c_u_t_e 'signature(object = "clusterAnnotation")': This function
          does nothing since this is an abstract class.

     _e_x_e_c_u_t_e<- 'signature(object = "clusterAnnotation")': This function
          does nothing since this is an abstract class.

     _r_e_s_e_t 'signature(object = "clusterAnnotation")': This function
          resets the 'clusterset'-slot to an empty list.

     _p_r_i_n_t 'signature(object = "clusterAnnotation")': This function
          does nothing since this is an abstract class.

_A_u_t_h_o_r(_s):

     Gunnar Wrobel, <URL: http://www.gunnarwrobel.de>.

_S_e_e _A_l_s_o:

     'goCluster-class', 'clusterModule-class', 'clusterData-class',
     'clusterAnnotationGO-abp-class',
     'clusterAnnotationChromosome-abp-class'

