Bnapus                  package:bim                  R Documentation

_C_r_o_s_s _s_t_r_u_c_t_u_r_e _f_o_r _c_o_m_p_l_e_t_e _B_r_a_s_s_i_c_a _n_a_p_u_s _d_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

     Contains genotypes and phenotypes for Brassica napus study,
     including 0- 4- and 8-week vernalization, survival, and 19
     chromosomes.

_U_s_a_g_e:

     data(Bnapus)

_F_o_r_m_a_t:

     See 'read.cross' in 'library(qtl)' for format.

_S_o_u_r_c_e:

     Thomas C. Osborn (<URL: mailto:tcosborn@facstaff.wisc.edu>),
     Department of Agronomy, UW-Madison (<URL:
     http://agronomy.wisc.edu>).

_R_e_f_e_r_e_n_c_e_s:

     *  <URL: http://www.stat.wisc.edu/~yandell/qtl/data/osborn/Bnapus>

     *  Ferreira ME, Satagopan J, Yandell BS, Williams PH, Osborn TC
        (1995) Mapping loci controlling vernalization requirement and
        flowering time in Brassica napus. Theor Appl Genet 90: 727-732.
        [original source and analysis]

     *  JM Satagopan, BS Yandell, MA Newton and TC Osborn (1996) Markov
        chain Monte Carlo approach to detect polygene loci for complex
        traits. Genetics 144: 805-816. <URL:
        http://www.genetics.org/cgi/content/abstract/144/2/805> [first
        MCMC for experimental crosses; analysis of B. napus N2=LG9; see
        'vern' data]

     *  Kole C, Thorman CE, Karlsson BH, Palta JP, Gaffney P, Yandell
        BS, Osborn TC (2001) Comparative mapping of loci controlling
        winter survival and related traits in oilseed Brassica rapa and
        B. napus. Molecular Breeding 1: 329-339. [refined map and
        reanalysis]

_S_e_e _A_l_s_o:

     'read.cross','plot.bim'

_E_x_a_m_p_l_e_s:

     data(Bnapus)

     summary(Bnapus)
     plot(Bnapus)
     ## Not run: 
     Bnapus.bim = run.bmapqtl(Bnapus,"log10flower8")
     ## End(Not run)

