Phenoclusters            package:GraphAT            R Documentation

_Y_e_a_s_t _G_e_n_e-_K_n_o_c_k_o_u_t _F_i_t_n_e_s_s _D_a_t_a _C_l_u_s_t_e_r _M_e_m_b_e_r_s_h_i_p_s

_D_e_s_c_r_i_p_t_i_o_n:

     This data set contains cluster memberships for yeast genes
     clustered using fitness deficiency scores from gene knockout
     experiments from Giaever et al. Nature (2002). The 3000 most
     variable genes were clustered using k-means with 30 clusters

_U_s_a_g_e:

     data(Phenoclusters)

_F_o_r_m_a_t:

     A matrix whose rows are the 3000 genes and whose two columns are
     gene name and cluster membership number.

_S_o_u_r_c_e:

     <URL: http://gobi.lbl.gov/YeastFitnessData>

_R_e_f_e_r_e_n_c_e_s:

     Giaever, G. et al. 2002 ``Functional profiling of the
     Saccharomyces cerevisiae genome.'' Nature *418*, 387-391.

_E_x_a_m_p_l_e_s:

     data(Phenoclusters)

     ## Compute the adjacency matrix for the corresponding cluster graph:
     phenoMat<-clust2Mat(Phenoclusters[,2])

