Entry: Phenoclusters
Aliases: Phenoclusters
Keywords: datasets
Description: Yeast Gene-Knockout Fitness Data Cluster Memberships
URL: ../../../library/GraphAT/html/Phenoclusters.html

Entry: causton
Aliases: causton
Keywords: datasets
Description: Yeast mRNA Expression Data
URL: ../../../library/GraphAT/html/causton.html

Entry: cellcycle
Aliases: ccCM nNamescc
Keywords: datasets
Description: Cell-Cycle Cluster Matrix
URL: ../../../library/GraphAT/html/cellcycle.html

Entry: clust2Mat
Aliases: clust2Mat
Keywords: data
Description: Function to compute adjacency matrix of cluster graph given a vector of cluster memberships
URL: ../../../library/GraphAT/html/clust2Mat.html

Entry: depthmat
Aliases: depthmatBP depthmatCC depthmatMF
Keywords: data
Description: Matrices of depth of association for pairs of YEAST genes with respect to each of the BP,CC and MF ontologies of the GO database
URL: ../../../library/GraphAT/html/depthmat.html

Entry: getpvalue
Aliases: getpvalue
Keywords: htest
Description: Function to obtain P values from the Edge permutation and Node permutation tests respectively
URL: ../../../library/GraphAT/html/getpvalue.html

Entry: giaever
Aliases: giaever
Keywords: datasets
Description: Yeast Gene-Knockout Fitness Data
URL: ../../../library/GraphAT/html/giaever.html

Entry: mRNAclusters
Aliases: mRNAclusters
Keywords: datasets
Description: Yeast mRNA Expression Data Cluster Memberships
URL: ../../../library/GraphAT/html/mRNAclusters.html

Entry: makeClustM
Aliases: makeClustM
Keywords: graphs
Description: Make an adjacency matrix for a cluster graph
URL: ../../../library/GraphAT/html/makeClustM.html

Entry: mat2UndirG
Aliases: mat2UndirG
Keywords: graphs
Description: Change graph representations
URL: ../../../library/GraphAT/html/mat2UndirG.html

Entry: permPower
Aliases: permPower
Keywords: htest
Description: Function to compute estimated probability of detecting preferential connection of intracluster nodes
URL: ../../../library/GraphAT/html/permPower.html

Entry: perms
Aliases: permEdgesM2M permNodesM2M
Keywords: graphs
Description: Randomly permute edges or node labels in a graph
URL: ../../../library/GraphAT/html/perms.html
