Entry: SAM-class
Aliases: SAM-class SAM identify,SAM-method plot,SAM-method print,SAM-method show,SAM-method summary,SAM-method
Keywords: classes
Description: Class SAM
URL: ../../../library/siggenes/html/SAM-class.html

Entry: args.sam
Aliases: args.sam
Keywords: documentation
Description: Argument list for SAM-specific methods
URL: ../../../library/siggenes/html/args.sam.html

Entry: delta.plot
Aliases: delta.plot
Keywords: hplot
Description: Delta Plots
URL: ../../../library/siggenes/html/delta.plot.html

Entry: ebam
Aliases: ebam
Keywords: htest
Description: Empirical Bayes Analysis of Microarrays
URL: ../../../library/siggenes/html/ebam.html

Entry: ebam.wilc
Aliases: ebam.wilc
Keywords: htest
Description: Empirical Bayes Analysis using Wilcoxon Rank Sums
URL: ../../../library/siggenes/html/ebam.wilc.html

Entry: find.a0
Aliases: find.a0
Keywords: htest
Description: Computation of the Fudge Factor
URL: ../../../library/siggenes/html/find.a0.html

Entry: fudge2
Aliases: fudge2
Keywords: optimize
Description: Fudge Factor
URL: ../../../library/siggenes/html/fudge2.html

Entry: list.siggenes
Aliases: list.siggenes
Keywords: IO file
Description: List of the significant genes
URL: ../../../library/siggenes/html/list.siggenes.html

Entry: na.handling
Aliases: na.handling
Keywords: utilities
Description: Handling of Missing Values
URL: ../../../library/siggenes/html/na.handling.html

Entry: na.replace.cont
Aliases: na.replace.cont
Keywords: utilities
Description: Replacing of Missing Values in Continuous Data
URL: ../../../library/siggenes/html/na.replace.cont.html

Entry: na.replace.dist
Aliases: na.replace.dist
Keywords: utilities
Description: Handling of Missing Values in Categorical Data
URL: ../../../library/siggenes/html/na.replace.dist.html

Entry: pi0.est
Aliases: pi0.est
Keywords: htest smooth
Description: Estimation of the prior probability
URL: ../../../library/siggenes/html/pi0.est.html

Entry: qvalue.cal
Aliases: qvalue.cal
Keywords: htest
Description: Computation of the q-value
URL: ../../../library/siggenes/html/qvalue.cal.html

Entry: sam
Aliases: sam
Keywords: htest
Description: Significance Analysis of Microarray
URL: ../../../library/siggenes/html/sam.html

Entry: sam.dstat
Aliases: sam.dstat
Keywords: htest
Description: SAM Analysis Using a Modified t-statistic
URL: ../../../library/siggenes/html/sam.dstat.html

Entry: sam.plot2
Aliases: sam.plot2
Keywords: hplot
Description: SAM Plot
URL: ../../../library/siggenes/html/sam.plot2.html

Entry: sam.snp
Aliases: sam.snp
Keywords: htest
Description: SAM Analysis for Categorical Data
URL: ../../../library/siggenes/html/sam.snp.html

Entry: sam.wilc
Aliases: sam.wilc
Keywords: htest
Description: SAM Analysis Using Wilcoxon Rank Statistics
URL: ../../../library/siggenes/html/sam.wilc.html

Entry: siggenes-internal
Aliases: adjust.for.mt build.dperm cat.stat d.null d.stat pairt.cl.transform pairt.samp pairt.samp.transform Rfold.cal setup.mat.samp stats.cal wilc.stat ebam.old ebam.wilc.old find.a0.old neglogLik.repeat q.value.old q.value.wilc R.fold.old ratio.est rs.cal sam.sampler xy.cal p0.est quantiles
Keywords: internal
Description: Internal siggenes functions
URL: ../../../library/siggenes/html/siggenes-internal.html
