clusterSignif-class        package:goCluster        R Documentation

_C_l_a_s_s "_c_l_u_s_t_e_r_S_i_g_n_i_f"

_D_e_s_c_r_i_p_t_i_o_n:

     An abstract class that provides a framework for the significance
     analysis methods provided by 'goCluster'.

_D_e_t_a_i_l_s:

     This class provides a wrapper for the selection algorithms
     employed by 'goCluster'. The class provides a slot to hold the
     class that is being used for the statistical analysis and a slot
     for the selected annotation terms.

_S_l_o_t_s:

     '_s_t_a_t_s_e_t': Object of class '"list"', this slot contains the
          statistical values that the class will use in order to decide
          which annotation terms are interesting or not. This can be a
          simple copy of the underlying 'clusterStatistic' object but
          it can as well hold corrected value depending on the function
          of this class.

     '_s_e_l_e_c_t_i_o_n': Object of class '"list"', this is the list of
          elements that were selected by the algorithm as being
          interesting.

     '_s_t_a_t': Object of class '"clusterStatistic"', the statistical
          method that is used to identify interesting gene groups.

     Additional slots are described in the documentation for the
     'clusterModule-class'.

_E_x_t_e_n_d_s:

     Class '"clusterModule"', directly.

_M_e_t_h_o_d_s:

     _c_o_n_f_i_g 'signature(object = "clusterModule")': This function does
          nothing since this is an abstract class.

     _s_e_t_u_p 'signature(object = "clusterModule")': This function returns
          an empty list since this is an abstract class.

     _s_e_t_u_p<- 'signature(object = "clusterModule")': This function does
          nothing since this is an abstract class.

     _e_x_e_c_u_t_e 'signature(object = "clusterModule")': This function does
          nothing since this is an abstract class.

     _e_x_e_c_u_t_e<- 'signature(object = "clusterModule")': This function
          does nothing since this is an abstract class.

     _r_e_s_e_t 'signature(object = "clusterModule")': This function resets
          the 'clusterset'-slot to an empty list.

_A_u_t_h_o_r(_s):

     Gunnar Wrobel, <URL: http://www.gunnarwrobel.de>.

_S_e_e _A_l_s_o:

     'goCluster-class', 'clusterModule-class',
     'clusterSignifBase-class', 'clusterSignifBonferroni-class',
     'clusterSignifFDR-class'

