writeMAGEML             package:RMAGEML             R Documentation

_w_r_i_t_e _M_A_G_E_M_L _d_o_c_u_m_e_n_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     This function writes MAGEML documents from MAGE Object references.

_U_s_a_g_e:

     writeMAGEML( mageOM = NULL, directory = ".", file = NULL)

_A_r_g_u_m_e_n_t_s:

  mageOM: Reference to MAGE Object Model

directory: Directory to which the MAGEML file should be written to

    file: Filename.  Note should have extension xml e.g. update.xml

_A_u_t_h_o_r(_s):

     Steffen Durinck, <URL: http://www.esat.kuleuven.ac.be/~sdurinck>
       Joke Allemeersch, <URL:
     http://www.esat.kuleuven.ac.be/~jallemee>.

_R_e_f_e_r_e_n_c_e_s:

     Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S,
     Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL,
     Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J,
     Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D,
     Stoeckert CJ Jr and Brazma A. Design and implementation of
     microarray gene expression markup language (MAGE-ML). Genome Biol.
     2002 Aug 23;3(9):RESEARCH0046.

_S_e_e _A_l_s_o:

     'importMAGEOM','writeMAGEML','addDerivedData','addNormToMAGEML'

_E_x_a_m_p_l_e_s:

     #data<-system.file("MAGEMLdata", package="RMAGEML")
     #mageom<-importMAGEOM(directory = data)
     #writeMAGEML(mageOM = mageom, directory = ".", file = "updatedMAGEML.xml")

