arrayCGH                package:GLAD                R Documentation

_O_b_j_e_c_t _o_f _C_l_a_s_s _a_r_r_a_y_C_G_H

_D_e_s_c_r_i_p_t_i_o_n:

     Description of the object 'arrayCGH'.

_V_a_l_u_e:

     The object 'arrayCGH' is a list with at least a data.frame named
     'arrayValues' and a vector named 'arrayDesign'. The data.frame
     'arrayValues' must contain the following fields :

     Col: Vector of columns coordinates.

     Row: Vector of rows coordinates.

     ...: Other elements can be added.


     The vector 'arrayDesign' is composed of 4 values :  c(arrayCol,
     arrayRow, SpotCol, SpotRow). The array CGH is represented by
     arrayRow*arrayCol blocs and each bloc is composed of Row*Col
     spots.

     N.B. : Col takes the values in 1:arrayRow*SpotRow and Row takes
     the values in 1:arrayCol*SpotCol

_A_u_t_h_o_r(_s):

     Philippe Hup, Philippe.Hupe@curie.fr.

_S_e_e _A_l_s_o:

     'glad'.

_E_x_a_m_p_l_e_s:

     data(arrayCGH)

     # object of class arrayCGH

     array <- list(arrayValues=array2, arrayDesign=c(4,4,21,22))
     class(array) <- "arrayCGH"

