affectationGNL             package:GLAD             R Documentation

_L_a_b_e_l _A_s_s_i_g_n_m_e_n_t

_D_e_s_c_r_i_p_t_i_o_n:

     The function 'affectation.profileCGH' gives a status (gained,
     normal or lost) to each BAC.

_U_s_a_g_e:

     affectationGNL.profileCGH(profileCGH, alpha=0.001, region="Region", verbose=FALSE, ...)

_A_r_g_u_m_e_n_t_s:

profileCGH: Object of class 'profileCGH'.

   alpha: Outlier detected in lost or gained region that lie between
          the alpha/2 lower tail and the alpha/2 upper tail of the
          estimated distribution of the normal DNA population are
          considered as normal.

  region: Specifies the name of the variable which has been used during
          the MSHR clustering by chromosome step.

 verbose: If 'TRUE' some information are printed

     ...: 

_V_a_l_u_e:

     An object of class 'profileCGH' with the following added
     information in the data.frame attribute 'profileValues' : 

 ZoneGNL: Gain is coded by 1, Loss  by -1 and Normal by 0.

_A_u_t_h_o_r(_s):

     Philippe Hup, Philippe.Hupe@curie.fr.

_S_e_e _A_l_s_o:

     'glad'.

