qsummary               package:qvalue               R Documentation

_D_i_s_p_l_a_y _q_v_a_l_u_e _o_b_j_e_c_t

_D_e_s_c_r_i_p_t_i_o_n:

     Display summary information for a qvalue object.

_U_s_a_g_e:

     qsummary(qobj, cuts = c(1e-04, 0.001, 0.01, 0.025, 0.05, 0.1, 1),
                  digits = getOption("digits"), ...)
     ## S3 method for class 'qvalue':
     summary(object, ...)

_A_r_g_u_m_e_n_t_s:

qobj, object: Qvalue object

    cuts: Vector of significance value to use for table (optional)

  digits: Significant digits to display (optional)

     ...: Any other arguments

_D_e_t_a_i_l_s:

     'qsummary' shows the original call, estimated proportion of true
     null hypotheses, and a table comparing the number of significant
     calls for the raw p-values and for the calculated q-values using a
     set of cutoffs given by 'cuts'.

_V_a_l_u_e:

     Invisibly returns the original object.

_A_u_t_h_o_r(_s):

     Alan Dabney adabney@u.washington.edu and Gregory R. Warnes
     gregory_r_warnes@groton.pfizer.com

_S_e_e _A_l_s_o:

     'qvalue', 'qplot', 'qwrite', 'qvalue.gui'

_E_x_a_m_p_l_e_s:

     ## Not run: 
     qobj <- qvalue(p)
     print(qobj)
     summary(qobj, cuts=c(0.01, 0.05))
     ## End(Not run)

