AAAlphabet-class         package:pairseqsim         R Documentation

_C_l_a_s_s "_A_A_A_l_p_h_a_b_e_t" _A_m_i_n_o _A_c_i_d _A_l_p_h_a_b_e_t

_D_e_s_c_r_i_p_t_i_o_n:

     Chars alowed in a protein sequence. It is used by the method
     'initialize' of class AASequence to check if the chars in the
     sequence are known (recognized by the package).

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("AAAlphabet",
     ...)'.

_S_l_o_t_s:

     '._D_a_t_a': Object of class '"character"' Chars allowed in protein
          sequences

     '_i_n_f_o': Object of class '"character"' "AAAlphabet"

_E_x_t_e_n_d_s:

     Class '"character"', directly.

_M_e_t_h_o_d_s:

     _l_e_v_e_l_s 'signature(x = "AAAlphabet")':  internal

     _s_h_o_w 'signature(object = "AAAlphabet")':  show

_A_u_t_h_o_r(_s):

     Witold E. Wolski

_S_e_e _A_l_s_o:

_E_x_a_m_p_l_e_s:

     new("AAAlphabet")

