maGeneTable          package:marrayClasses          R Documentation

_T_a_b_l_e _o_f _s_p_o_t _c_o_o_r_d_i_n_a_t_e_s _a_n_d _g_e_n_e _n_a_m_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     This function produces a table of spot coordinates and gene names
     for objects of class '"marrayRaw"', '"marrayNorm"', and
     '"marraySpots"'.

_U_s_a_g_e:

     maGeneTable(object)

_A_r_g_u_m_e_n_t_s:

  object: microarray object of class '"marrayRaw"', '"marrayNorm"', or
          '"marraySpots"'.

_V_a_l_u_e:

     an object of class 'data.frame', with rows corresponding to
     spotted probe sequences. The first four columns are the grid
     matrix and spot matrix coordinates, and the remaining columns are
     the spot descriptions stored in the 'maGnames' slot of the
     microarray object.

_A_u_t_h_o_r(_s):

     Yee Hwa (Jean) Yang, Sandrine Dudoit, <URL:
     http://www.stat.berkeley.edu/~sandrine>.

_S_e_e _A_l_s_o:

     'marrayInfo', 'marrayLayout', 'marrayRaw', 'marrayNorm', 
     'marraySpots', 'maCompCoord'.

_E_x_a_m_p_l_e_s:

     # Example uses swirl dataset, for description type ? swirl

     data(swirl)

     tab<-maGeneTable(swirl)
     tab[1:10,]

