7b9bba6aa351f3d8a5b15693c10dd27f *CONTENTS
88517f7a4677c528efba6efc76d044e9 *DESCRIPTION
9e22d40fa0c926ca20023c1fc958b44d *INDEX
4bf45054ed3a536f7510d123d054686c *Meta/Rd.rds
7f0ddb6caac1089fa00d39f7f9ed414c *Meta/hsearch.rds
faebac8021cdfcb884f6cdf5c444cf03 *Meta/vignette.rds
1c73f808412f992b26ffb23ebea08558 *R/limmaGUI
c428a6acb668f674cf7961082b1f5f8c *chtml/limmaGUI.chm
710ec97c313647c943bfcd6179b4c3fd *doc/ApoAISpotTypesInExcel.png
014a9a0eeadbe2bc0d9d4e259bd60a80 *doc/ApoAITargetsInExcel.png
548b1647b1b667ea51ff541b6800a51e *doc/Bob/BobLimmaLoaded.jpg
34c26cacde468dcd37b389ec9b60b327 *doc/Bob/CalculateDupCor.jpg
88a80a1c93859313262628b1860d7f7f *doc/Bob/ChooseNormalizationMethod.jpg
ddf4222c61f4dab2399763ee2316a6d1 *doc/Bob/ChooseParameter.jpg
56fbd87a8a1aababd66e795064dabd84 *doc/Bob/ChooseParameterization.jpg
1abd174c20d8c5d2d52a381377ac6d04 *doc/Bob/ComputeLinearModelFitSelected.jpg
c0496d3cb4e9d036d1077c51778d2448 *doc/Bob/CreateNewParameterizationNo.jpg
4da81dd65f5bc8f275fda65439e63d0e *doc/Bob/DupCorBoxPlot.jpg
0babf30b70b00e812115dbd255f88874 *doc/Bob/DupCorBoxPlotSelected.jpg
eff626d44dab4977a751258e9c5cf140 *doc/Bob/DupCorMB.jpg
445cbe653210c6e61fdf99a26d6b0f64 *doc/Bob/LinearModelComputed.jpg
83f792ded6f16e3eb2bd6c64c9aa263b *doc/Bob/LogOddsPlot.jpg
53abaa2f30fc9a37426f399249699dbb *doc/Bob/LogOddsPlotSelected.jpg
b916f1015a6f361ebb350245800c5fdf *doc/Bob/NormalizeBetweenArraysNo.jpg
6724a28e5590108958246e923111a94d *doc/Bob/NormalizeWithinArrays.jpg
c4a3955518c55696e28931bcc36baab6 *doc/Bob/NumberDuplicates.jpg
2c38a68151664ccce85aca12eb871b9c *doc/Bob/OpenSelected.jpg
a258eae3b27b6e21b42d438957eb85bd *doc/Bob/OpeningBobLimma.jpg
a8830884197100e791709b84a847b52a *doc/Bob/ParameterDropDowns.jpg
7d5408035da569fd9bea2eeb12b917bd *doc/Bob/ParameterizationName.jpg
8c788df83777f4157a4e1111b0d3204b *doc/Bob/RNATargets.jpg
cba6fc48adb82cf51a5b21789d2df71d *doc/Bob/SaveAsSelected.jpg
8e9ddc4c395f48c9250dcb516d4d276c *doc/Bob/SavingBobLinearModelComputed.jpg
c9c535f7ed88d4ffa48e99aa9ef3c1f7 *doc/Bob/SpotsIncludedInLinearModel.jpg
17f3833330eb8025c940167f6e8f1587 *doc/Bob/Toptable.jpg
4bcb6d5a3e8de36b1ee4f432a4797909 *doc/Bob/ToptableSelected.jpg
278854a1a3be56dcc736419d1b8403e9 *doc/Bob/ZeroDEgeneLabels.jpg
5ea2754c8b473124ad82f51b609ccb35 *doc/Bob/index.html
2b169d617b8698359fb8f185567ad419 *doc/Bob/layout.jpg
dabbc4a9704503f5ccbf6bc4a10a36c1 *doc/CustMenu.html
2631b400b6bab9a25b34627f42f249b8 *doc/ImaGeneTargetsFile.png
46d4237cfa05119ff358a8b91ab67948 *doc/InputFiles.html
098d359534be0b9edec72f33a1efdacf *doc/LinModIntro.pdf
ab539aa358aa87e8e960d9b4402e440f *doc/LinModIntro.tex
c6d82b71eea3e03acf2565acb8764c08 *doc/ScorecardSpotTypesInExcel.png
d3d9e74a87ce001c457f047aa8e20ef9 *doc/ScorecardsTargetsInExcel.png
88a80a1c93859313262628b1860d7f7f *doc/Swirl/ChooseNormalizationMethod.jpg
e01061cd7841e706a2286551031b94e3 *doc/Swirl/ChooseParameter.jpg
453fa72d7b99fb656a4cd6a2da4664bf *doc/Swirl/ChooseParameterizationDialog.jpg
c6461a75ef76a4f44f468279b23a524f *doc/Swirl/ChooseSwirlWorkingDir.jpg
4e08cb59186e4f94ab1eab275f617dcd *doc/Swirl/ComputeLinearModelFitSelected.jpg
705e08aa89a12167074c3d03df1e77ec *doc/Swirl/CreateNewParameterization.jpg
b63cc77c9c6769fcd0f46e0e574825eb *doc/Swirl/DEGeneLabelsOptions.jpg
6819a7007ba1ce668bc85e2dbab5d840 *doc/Swirl/DataSetNameSwirl.jpg
a1a18f846238959aee2d6f9391ff9de0 *doc/Swirl/EvalRCodeGALexample.jpg
27ee2c4816f02717fc3341126413c3da *doc/Swirl/EvaluateRCodeSelected.jpg
1292251b600148648960ab98f376a331 *doc/Swirl/ExportHTMLReportSelected.jpg
5218ce442714c2f002a9a0bd9b37f182 *doc/Swirl/FileSaveAsSelected.jpg
319cc523d38927371a4b00980f981716 *doc/Swirl/GALTargetsandSpotTypesFilesSelected.jpg
ec6f87fc72220c38c1c6a367efa92edc *doc/Swirl/HTMLreportComponentsDialog.jpg
135302522dbc9c199883d65bf620eb80 *doc/Swirl/ImageArrayPlotEnterExpression.jpg
a95bdea3759b3324f119f86cffb8093c *doc/Swirl/ImageArrayPlotSelected.jpg
6216df56971f2af6b235c29b70c86bb3 *doc/Swirl/ImageArrayPlotSlide81.jpg
09e24de962a6a9208dc321230598b241 *doc/Swirl/ImageProcessingFileType.jpg
11865fa40e94fe4128e144dadbcbae20 *doc/Swirl/LayoutParameters.jpg
6178e39fc5c1b53e608987dafc6e7506 *doc/Swirl/LogOddsPlot.jpg
08431b72c2b3abbc777a7a0fbd37d6db *doc/Swirl/LogOddsPlotSelected.jpg
a23204a42d39bea441a1183f399b9f56 *doc/Swirl/MAColorCodedScatterPlotSwirlFileClose.jpg
3f58903afca0a6b9b9597e08f8441db1 *doc/Swirl/MAColorCodedScatterPlotSwirlSlide93.jpg
05cff9500eb6405af24ca65d1a212001 *doc/Swirl/MAPlotFittedMValues.jpg
270848990088047db8d5b9abb744094a *doc/Swirl/MAPlotFittedMValuesSelected.jpg
7d802384db69487517c81a4954ebb701 *doc/Swirl/MAScatterSlide81.jpg
7c289d44b8cbb3d800bbb18ba9743716 *doc/Swirl/MBoxPlotByPrintTipGroup.jpg
a9b449a3c7dc2066fb7cd6c4ab4415e5 *doc/Swirl/MBoxPlotSelectedFromMenu.jpg
b916f1015a6f361ebb350245800c5fdf *doc/Swirl/NormalizeBetweenArraysNo.jpg
31abdbeff2d8e71f29d8c0503f622cc9 *doc/Swirl/NormalizeBetweenArraysYes.jpg
6724a28e5590108958246e923111a94d *doc/Swirl/NormalizeWithinArrays.jpg
6b6c4182e84b4487d689788aa9435685 *doc/Swirl/NumDuplicatesDialog.jpg
080ea795ebe65f3e165ef4b1559e1a08 *doc/Swirl/OpenGALandTargetsandSpotTypesFiles.jpg
2c8c983c6310bbc5d9db81700b00e03b *doc/Swirl/OpenTargetsFileDialog.jpg
ad275ade73f7fac94f139032ed8d516f *doc/Swirl/OpeningFishGAL.jpg
056ba194ab8a13505d3aa7405bbb8b5a *doc/Swirl/OpeningWeaverLimmaFile.jpg
92c60e5d17ac227454994fa6cba702e4 *doc/Swirl/PNGImageParametersForHTML.jpg
6b64f194ed07f258281d942ab2bd5d33 *doc/Swirl/PlotBoxPlotBySlide.jpg
d313c8321b85c2fe20990c7265804cfa *doc/Swirl/PlotByPrintTipGroup.jpg
9306dad356f26f38555a0e0d51717ed3 *doc/Swirl/PlotLabelsDialog.jpg
013d052289f906f43bc0b18ed736efdd *doc/Swirl/PlotPointSymbolsAndColors.jpg
6b9fa9b0b47a47abc4ba1d1978d43d4c *doc/Swirl/PlotTitleForImageArrayPlot.jpg
bdc02ca048153e983a6fc0b3852fcefa *doc/Swirl/PrintTipGroupMAPlotSelectedFromMenu.jpg
19a9878270ee8a53dbca04dab2212718 *doc/Swirl/PrintTipGroupMAScatterPlotsSlide93.jpg
00ea98f5c2178b140d3be7a52767fc8f *doc/Swirl/QQTplot.jpg
559e445647cd37d9241e16f5a67fe921 *doc/Swirl/QQTplotSelected.jpg
bddcf02893b5e5e8ffe2034114eb2470 *doc/Swirl/SaveAsSelected.jpg
80d5fc0ef404cc802f792150dc9d81b5 *doc/Swirl/SaveLimmaFileDialog.jpg
90de8bdda93bf1d8f4d4a550f2e76f1e *doc/Swirl/SavingSwirlHTML.jpg
aedf4e8f2376e493f29a777f58ff8ce2 *doc/Swirl/SavingSwirlLimmaFile.jpg
bac9396d9183b86771e8d5488e55537b *doc/Swirl/ScaleBoxPlot.jpg
017eb54685ec1d0871efebff6571d022 *doc/Swirl/SelectingParameterForSwirlLinearModel.jpg
e70795076329289551160ce7394b3bbc *doc/Swirl/ShowColorCodedSpotTypesNo.jpg
21c616db1988cd76399a3630ec7acb3e *doc/Swirl/ShowTextResults.jpg
4ce87ee7298e17cb899e38ecbf228928 *doc/Swirl/Slide81Selected.jpg
6ff714d7d0deb536772693aedb593be3 *doc/Swirl/Slide93Chosen.jpg
c94d112d70dee588bb459af82ef81b1d *doc/Swirl/SpotQualityWeighting.jpg
0209fcd6a9c0e769a4384771477e6384 *doc/Swirl/SpotTypesTable.jpg
c9c535f7ed88d4ffa48e99aa9ef3c1f7 *doc/Swirl/SpotsIncludedInLinearModel.jpg
d760916d5601a566b205add916f96323 *doc/Swirl/SwirlChooseParameterization.jpg
631f5b724042d9bce19fbc19291c9cf8 *doc/Swirl/SwirlColorCodedMAPlotSelectedFromPlotMenu.jpg
0ad58e127a14719fb19e480a13442868 *doc/Swirl/SwirlDesignMatrix.jpg
114cd76c8ed13499a99880b26a48ae96 *doc/Swirl/SwirlGAL.jpg
70e2e26179acb0d1416beee5fe9297a9 *doc/Swirl/SwirlGetParameter.jpg
11865fa40e94fe4128e144dadbcbae20 *doc/Swirl/SwirlLayout.jpg
2b70f6eccd01bbcc56a3214403c432f7 *doc/Swirl/SwirlLimmaFileNameInTitleBar.jpg
7907314a5463e181317bc3b9d0906b83 *doc/Swirl/SwirlLinearModelComputed.jpg
11ae9ae9511ecda4a1c60a2268bdacce *doc/Swirl/SwirlParameterizationAsPairs.jpg
342f35ae5145bb9ff0b8709d5aa52bc3 *doc/Swirl/SwirlParameterizationName.jpg
00ea98f5c2178b140d3be7a52767fc8f *doc/Swirl/SwirlQQTplot.jpg
004f7909312941a232cd779ae238d5fd *doc/Swirl/SwirlRNATargets.jpg
2dd6073e73f03fdec3fd7950bd7e8e46 *doc/Swirl/SwirlSpotTypes.jpg
f3c7b759b37e440555fcaaf2141c98c9 *doc/Swirl/SwirlTargets.jpg
ffe940e1823184533a98974089556c43 *doc/Swirl/SwirlTopTable.jpg
d478fe90b16db42d95f6a06e0c549b74 *doc/Swirl/ToptableOptions.jpg
c88c993e2ecaadfd92d8fd220254540b *doc/Swirl/ToptableSelected.jpg
d33af89a67249576a7d098ad6853cf7a *doc/Swirl/UseBackgroundCorrection.jpg
abb8ede8b0d014e7a0136d5669bca55d *doc/Swirl/ViewExistingParameterizationSelected.jpg
ee88b9f8c6d1baeb39d35a4ed6cb24a3 *doc/Swirl/galEvalRCodeResults.jpg
45dbfcfbea09ecfbe79a8394595518b3 *doc/Swirl/index.html
7a0239291eab6ca215823c773e4e92c4 *doc/Swirl/limmaGUINewFileSelected.jpg
6e96cc752db0f186158b328a532f9f70 *doc/Swirl/limmaGUImainWindow.jpg
59c8aeb781271b625e751db97af7eacd *doc/Swirl/limmaGUImainWindowSwirlArraysLoaded.jpg
d341d1747d66ac94619c047c6586cefd *doc/Swirl/mainWindowAfterLinModFit.jpg
c73ad8f800d8611579610487265551c4 *doc/SwirlSampleInExcel.png
42bf48774405a968a55ab77c9c6b818c *doc/Weaver/ChooseParameterIA.jpg
fac5f6f96f9651f266da0a0bc005feaa *doc/Weaver/ChooseParameterizationIA.jpg
7fa23c514eaf09604031ea10af901736 *doc/Weaver/ChooseParameterizationMt.jpg
87013267770dc43a54f0d5cf285f6ffc *doc/Weaver/CreateNewParameterizationNo.jpg
de61b3c3ead68425c85bb0e56acdc0eb *doc/Weaver/CreateNewParameterizationSelected.jpg
2c12a4e32254c85c5b07fa12aa9feb0b *doc/Weaver/DesignIALoaded.jpg
4765138946faeb5e117dbd2d809fdbd8 *doc/Weaver/DesignMatrixDialog.jpg
aa8e34681f469b19a5e53ea2f10c590b *doc/Weaver/DesignMatrixMt.jpg
c6e6ba92d824763b5065e5ddd1460a4a *doc/Weaver/DropDownsAdvancedSelected.jpg
987734129f44c542eb3387662687eaab *doc/Weaver/EvaluateSelected.jpg
d6f48bbc3c6d7e68b80c78526a5a7121 *doc/Weaver/HeatDiagram.jpg
a914af47a839d52536825417adb2acd2 *doc/Weaver/IAParameterizationName.jpg
ec3a375531e8f6c9f69af6602c71dad3 *doc/Weaver/IAcreated.jpg
5145fc0855e844960634996d8d7245fc *doc/Weaver/IAtoptable.jpg
5d590956b089b2fa6ff7705799c0a849 *doc/Weaver/MMPlotCutOffValueDialog.jpg
179013e6c9896453c6b9a6dacc62c38d *doc/Weaver/MMPlotSelected.jpg
5ccb880378afce16c51527d859160a01 *doc/Weaver/MMplotMutant11Mutant21.jpg
d1646835b933e87f089e6ebf3efd0656 *doc/Weaver/MtLinearModelComputed.jpg
3623997056eafd420b1805a385ebefe7 *doc/Weaver/Mutant11Selected.jpg
3b0add5f0c444cd2b1ccc6d8e5b2c29a *doc/Weaver/Mutant21Selected.jpg
b916f1015a6f361ebb350245800c5fdf *doc/Weaver/NormalizeBetweenArraysNo.jpg
6724a28e5590108958246e923111a94d *doc/Weaver/NormalizeWithinArrays.jpg
6b6c4182e84b4487d689788aa9435685 *doc/Weaver/NumDuplicatesDialog.jpg
2c38a68151664ccce85aca12eb871b9c *doc/Weaver/OpenSelected.jpg
2c5bcff519f049bbd3f79765f1c26ec8 *doc/Weaver/OpeningDesignIA.jpg
056ba194ab8a13505d3aa7405bbb8b5a *doc/Weaver/OpeningWeaverLimmaFile.jpg
7165c4172417e6747dcc50bf31f0d07a *doc/Weaver/ParameterizationNameMt.jpg
518797aa4b875950e3879dd14682f1c1 *doc/Weaver/PlotScaling.jpg
7a684b0363042e4790e30707707995ca *doc/Weaver/RcodeForHeatDiagram.jpg
2dac67e0e96c5313f1012a27433de62b *doc/Weaver/SavingWeaverIALimma.jpg
25f221c43a2e6664e693c1b019f9b035 *doc/Weaver/ShowGraphicalResultsOnly.jpg
c9c535f7ed88d4ffa48e99aa9ef3c1f7 *doc/Weaver/SpotTypesForLinearModel.jpg
c9c535f7ed88d4ffa48e99aa9ef3c1f7 *doc/Weaver/SpotsIncludedInLinearModel.jpg
6e0738889ffd46d676a8d57e453787f1 *doc/Weaver/ToptableSelectedIA.jpg
8f7c1caa01bfa7a469c2df0e0488a4a6 *doc/Weaver/WeaverIASaveAs.jpg
fc1d053cbeff17256ffba8ba82db0450 *doc/Weaver/WeaverScaleBoxPlot.jpg
c2966f31287ac6d64136742c6e4725bb *doc/Weaver/WeaverTargets.jpg
a54a8254da5ed46a7613357e6a1a223c *doc/Weaver/index.html
1b0b5b821b625404c2c657ef7cccd379 *doc/about.html
573c08688edbd3bad3820a120efebc0c *doc/about_files/BioinfBanner.jpg
5ccb880378afce16c51527d859160a01 *doc/about_files/Mutant11vsMutant21ScatterPlot.jpg
ffe940e1823184533a98974089556c43 *doc/about_files/SwirlToptable.jpg
179013e6c9896453c6b9a6dacc62c38d *doc/about_files/WeaverMtMMPlotSelected.jpg
7128e7627cc051bd2e35408f3b8222c9 *doc/about_files/wehilogo.gif
0581930e19d5e8018e64d0536b71bc3d *doc/extract.Rnw
d9309bf4e23fdb0ad9a823077369825a *doc/extract.Rnw.txt
f907cdb32ac44fb66e018768b5ec9415 *doc/extract.pdf
cd093f080f0c0461a5d6b64e48b96b0c *doc/import.html
d016b03a4efef46748f8ceaab5f330c6 *doc/import/DataSetName.png
ac812026a27d672d16d939651965999a *doc/import/ImportFilesSelected.png
f4c502e97e03815dafa55bfd75aa676b *doc/import/ImportMADialog.png
7a14ad7ec5e4327c7d9d4f3491b558a2 *doc/import/OpeningMFile.png
4591b0637a5675868cf1358176310768 *doc/import/WhetherNormalized.png
4a7c1c6f205a8409dacaa0affd439264 *doc/import/chooseDir.png
88ceb25fdf035472e7b5ffa94ac6c92a *doc/import/importSelected.png
22d477c7aede5b1c0205de4b08fd868f *doc/index.html
1a5713d2532737ec71a9cdb300f19932 *doc/lgDevel.html
b55121d092bb6cf61573eb9dcf9954d8 *doc/limmaGUI.Rnw
8de98435c4a95df2fbaf1ab8756ea558 *doc/limmaGUI.pdf
0a61969bdebca87e36e9e4ba0013c868 *etc/hist.R
0c6e2b76eeb75288ca2cdb0fbd33a9e9 *etc/limmaGUI-menus.txt
0beeb5b8fbc242dc88208f3b2ce6bfd8 *help/AnIndex
212f5d340527afab78ddb8f47f3bb3e2 *help/limmaGUI
f3e72fb172e79cdd530af3917ef1fd4a *html/00Index.html
32ddb7699cb405d59827e7d54b65edb3 *html/limmaGUI.html
8a629dfd73480f00f5151aa730377aca *latex/limmaGUI.tex
a8ba0135a78efbb57ac3e739790cef12 *man/limmaGUI.Rd
