arrayData	arrayData-class
arrayData-class	arrayData-class
as.exprSet	exprSetRG-class
as.exprSet,exprSetRG-method	exprSetRG-class
cbind	exprSetRG-class
cbind,exprSetRG,exprSetRG-method	exprSetRG-class
cbind.arrayData	cbind.arrayData
cbind.exprSetRG	cbind.exprSetRG
colCors	colCors
colorramp	colorramp
controlledApply	controlledApply
detectReplicas	detectReplicas
exprSetRG	exprSetRG-class
exprSetRG-class	exprSetRG-class
fdc	fdc
getExprSetGreen	exprSetRG-class
getExprSetGreen,exprSetRG-method	exprSetRG-class
getExprSetGreenMinusRed	exprSetRG-class
getExprSetGreenMinusRed,exprSetRG-method	exprSetRG-class
getExprSetLogRatio	exprSetRG-class
getExprSetLogRatio,exprSetRG-method	exprSetRG-class
getExprSetRed	exprSetRG-class
getExprSetRed,exprSetRG-method	exprSetRG-class
getExprSetRedMinusGreen	exprSetRG-class
getExprSetRedMinusGreen,exprSetRG-method	exprSetRG-class
getHybAttr	arrayData-class
getHybAttr,arrayData-method	arrayData-class
getHybAttrGreen	arrayData-class
getHybAttrGreen,arrayData-method	arrayData-class
getHybAttrList	arrayData-class
getHybAttrList,arrayData-method	arrayData-class
getHybAttrRed	arrayData-class
getHybAttrRed,arrayData-method	arrayData-class
getIndGreen	exprSetRG-class
getIndGreen,exprSetRG-method	exprSetRG-class
getIndRed	exprSetRG-class
getIndRed,exprSetRG-method	exprSetRG-class
getIntensities	arrayData-class
getIntensities,arrayData-method	arrayData-class
getSpotAttr	arrayData-class
getSpotAttr,arrayData-method	arrayData-class
getWeights	arrayData-class
getWeights,arrayData-method	arrayData-class
hybAttrList<-	arrayData-class
hybAttrList<-,arrayData-method	arrayData-class
initialize,arrayData-method	arrayData-class
initialize,exprSetRG-method	exprSetRG-class
intensities<-	arrayData-class
intensities<-,arrayData-method	arrayData-class
interweave	interweave
normalise	normalise
pDataGreen	exprSetRG-class
pDataGreen,exprSetRG-method	exprSetRG-class
pDataRed	exprSetRG-class
pDataRed,exprSetRG-method	exprSetRG-class
pDataSlide	exprSetRG-class
pDataSlide,exprSetRG-method	exprSetRG-class
phenoDataGreen	exprSetRG-class
phenoDataGreen,exprSetRG-method	exprSetRG-class
phenoDataRed	exprSetRG-class
phenoDataRed,exprSetRG-method	exprSetRG-class
phenoDataSlide	exprSetRG-class
phenoDataSlide,exprSetRG-method	exprSetRG-class
plot.imageMatrix	plot.imageMatrix
plotDistributions	plotDistributions
processArrayData	processArrayData
processArrayDataObject	processArrayDataObject
qualityDiagnostics	qualityDiagnostics
qualityParameters	qualityParameters
readIntensities	readIntensities
readpDataSlides	readpDataSlides
removeSpots	removeSpots
rowCors	colCors
rowFtests	rowFtests
rowttests	rowFtests
savepdf	savepng
savepng	savepng
shorth	shorth
show,arrayData-method	arrayData-class
show,exprSetRG-method	exprSetRG-class
simpleApply	simpleApply
slideMerge	slideMerge
slideSubset	exprSetRG-class
slideSubset,exprSetRG-method	exprSetRG-class
spatialLayout	spatialLayout
spotAttr<-	arrayData-class
spotAttr<-,arrayData-method	arrayData-class
spotMerge	spotMerge
visualiseHybridisations	visualiseHybridisations
visualiseQualityParameters	visualiseQualityParameters
weights<-	arrayData-class
weights<-,arrayData-method	arrayData-class
write.htmltable	write.htmltable
writeToFile	writeToFile
[,arrayData-method	arrayData-class
[,exprSetRG-method	exprSetRG-class
