Entry: SAGELyzer
Aliases: SAGELyzer getSAGESQL getTotalRNum getKNN noChunkKNN chunkKNN findNeighborTags getColNames
Keywords: manip
Description: Function to filter out the k nearest neighbors for a given tag
URL: ../../../library/SAGElyzer/html/SAGELyzer.html

Entry: SAGEMapper
Aliases: SAGEMapper doTag2UG doUG2Tag env2File getMapFileName
Keywords: manip
Description: Annotating SAGE tags using data from public databases
URL: ../../../library/SAGElyzer/html/SAGEMapper.html

Entry: SAGEToolTips
Aliases: SAGEToolTips
Keywords: datasets
Description: A list that maps SAGE task or procedure names to tips
URL: ../../../library/SAGElyzer/html/SAGEToolTips.html

Entry: SAGEWidget
Aliases: SAGEWidget getTasks getDMProc getKNNProc butsInTBox getTaskTips KNNArgsWidget
Keywords: misc
Description: A function that is the main interface for SAGElyzer
URL: ../../../library/SAGElyzer/html/SAGEWidget.html

Entry: con4Win
Aliases: con4Win con4Unix makeConnection executeQuery query4Unix closeConn tableExists
Keywords: misc
Description: Functions for database connection and manipulation
URL: ../../../library/SAGElyzer/html/con4Win.html

Entry: getGEOSAGE
Aliases: getGEOSAGE getFileNames getSampleId parseSAGE
Keywords: manip
Description: Automatically downloads SAGE libraries from NCBI
URL: ../../../library/SAGElyzer/html/getGEOSAGE.html

Entry: getNormFactor
Aliases: getNormFactor queryInfoDB
Keywords: misc
Description: Functions that get normalization factors for SAGE libraries
URL: ../../../library/SAGElyzer/html/getNormFactor.html

Entry: getTargetRow
Aliases: getTargetRow
Keywords: manip
Description: Function that retrieves data from selected SAGE libraries for a given SAGE tag
URL: ../../../library/SAGElyzer/html/getTargetRow.html

Entry: mergeSAGE
Aliases: mergeSAGE getLibInfo calNormFact getLibNNum getUniqTags writeSAGE4Win writeSAGE4Unix mapFile2Tag writeSAGECounts writeSAGE2DB getColSQL
Keywords: manip
Description: Functions to merge SAGE libraries based on unique SAGE tags
URL: ../../../library/SAGElyzer/html/mergeSAGE.html

Entry: mergeSAGEWidget
Aliases: mergeSAGEWidget GEOSAGEWidget mapSAGEWidget SAGE4Unix
Keywords: interface
Description: Widgets that provide the interface
URL: ../../../library/SAGElyzer/html/mergeSAGEWidget.html

Entry: querySAGE
Aliases: querySAGE getTableNames getColumnNames
Keywords: interface
Description: Functions that provide an interface to allow users to query a SAGE library database table
URL: ../../../library/SAGElyzer/html/querySAGE.html

Entry: selectLibs
Aliases: selectLibs getDBArgs getUnixDBArgs getBinding getWinDBArgs getTag getDefaults getSLyzerArgs writeSLyzerArgs modSLyzerArgs setSLyzerArgs runSLyzer writeSAGEKNN getSAGEKNN getLibCounts mapLib2File linkTag2UG remapTagNUG SAGEFromGEO procSAGE mapSAGE2UG SAGELyzerArgs showDBError setKNNArgs findNG4Tag ENV
Keywords: misc
Description: Functions to support the widgets of SAGElyzer
URL: ../../../library/SAGElyzer/html/selectLibs.html
