Tools for manipulating GO and microarrays.

User Guides and Package Vignettes

ALL	Acute Lymphoblastic Leukemia Data from the Ritz Laboratory
Bdists	Distance matrices for the BCR/ABL and NEG subgroups.
combGOGraph	Combine GO Graphs
compCorrGraph	A function to compute a correlation based graph from Gene Expression Data
compGdist	A function to compute the distance between pairs of nodes in a graph.
distCGO	Distances between GO graphs
distDGGO	Distances between GO graphs
enumPairs	Triad Functions
getGOCategory	Functions to Access GO data.
getGOChildren	Functions to Access GO data.
getGOParents	Functions to Access GO data.
getGOTerm	Functions to Access GO data.
GOHyperG	Hypergeometric Tests for GO
GOLeaves	Identify the leaves in a GO Graph
hasGOannote	Check for GO annotation
idx2dimnames	Index to Dimnames
isTriad	Triad Functions
makeGOGraph	Construct a GO Graph
Ndists	Distance matrices for the BCR/ABL and NEG subgroups.
notConn	Find genes that are not connected to the others.
oneGOGraph	Build a GO graph for one identifier
reduce2Degreek	Triad Functions
shortestPath	Shortest Path Analysis
triad	Triad Functions
triadCensus	Triad Functions