isProbeOnSpliceSite        package:splicegear        R Documentation

_C_h_e_c_k _t_h_e _p_r_e_s_e_n_c_e _o_f _p_r_o_b_e_s _o_n _c_e_r_t_a_i_n _e_x_o_n_s

_D_e_s_c_r_i_p_t_i_o_n:

     Return whether the probes are located on exons involved in
     (putative) alternative splicing or not.

_U_s_a_g_e:

     isProbeOnSpliceSite(probes, spSites)
     ## isSpliceSiteOnProbe is not yet implemented

_A_r_g_u_m_e_n_t_s:

  probes: object of class 'Probes'

 spSites: object of class 'spliceSites'

_D_e_t_a_i_l_s:

_V_a_l_u_e:

     The returned value in a list of two vectors of mode 'logical' of
     the same length: 

isintypeI: whether the probes are in a `type I' region or not.

isintypeII: whether the probe are in a `type II' region or not.

_A_u_t_h_o_r(_s):

     Laurent

_R_e_f_e_r_e_n_c_e_s:

     For details about `type I' and `type II', please refer to Huang
     Y.-H and Chen Y.-T and Lai J.-J. and Yang S.-T. and Yang U.-C.,
     PALSdb: Putative Alternative Splicing database, Nucleic Acids
     Research, 2002, pages 186-190

_E_x_a_m_p_l_e_s:

