maQualityMain          package:marrayTools          R Documentation

_C_a_l_c_u_l_a_t_e _b_a_s_i_c _a_r_r_a_y _w_i_d_e _s_t_a_t_i_s_t_i_c_s

_D_e_s_c_r_i_p_t_i_o_n:

     This is based on GenePix output and it calculates summary
     statistics of various signal to noise ratios.

_U_s_a_g_e:

     maQualityMain(mraw, path=".", fname, output = FALSE)
     maQuality(mraw, path=".")

_A_r_g_u_m_e_n_t_s:

    mraw: Microarray object of class `"marrayRaw"'. By default, plots
          are done for the first array in the batch.

    path: a character string representing the data directory. By
          default this is set to the current working directory (".").
          In the case where "fname" contains the full path name, path
          should be set to NULL. 

   fname: a vector of character strings representing the name of the
          output file. This is only used when "output" is TRUE.

  output: if TRUE, write the results to a file.

_V_a_l_u_e:

     Produce a lists of various summary statistics

_A_u_t_h_o_r(_s):

     Jean Yee Hwa yang

_S_e_e _A_l_s_o:

     'summary', 'maGenControls'

_E_x_a_m_p_l_e_s:

        data(swirl)
        datadir <- system.file("data", package="marrayInput")
        maControls(swirl) <- maGenControls(maGnames(swirl), id="Name")
        maQualityMain(swirl[,1], path=datadir)

