maBayesian            package:marrayTools            R Documentation

_C_a_l_c_u_l_a_t_e_s _a_n _O_d_d_s _R_a_t_i_o _f_o_r _E_a_c_h _G_e_n_e _i_n _a _M_u_l_t_i-_s_l_i_d_e _M_i_c_r_o_a_r_r_a_y _E_x_p_e_r_i_m_e_n_t.

_D_e_s_c_r_i_p_t_i_o_n:

     This function calls the function "lm.series" and "ebayes" in the
     package "limma" to calculate the log-odds of differential
     expression by empirical Bayes shrinkage of the standard errors
     towards a common value.

_U_s_a_g_e:

     maBayesian(mraw, ...)

_A_r_g_u_m_e_n_t_s:

    mraw: An object of class "matrix", "dataframe", "marrayRaw",
          "marrayNorm" or "exprSet" that contains gene expression data.

     ...: arguments for the fuction 'lm.series' and 'ebayes'

_V_a_l_u_e:

     See 'ebayes' for details.

_A_u_t_h_o_r(_s):

     Yee Hwa Yang jean@biostat.ucsf.edu 

_S_e_e _A_l_s_o:

     'lm.series','ebayes'

_E_x_a_m_p_l_e_s:

     ## data(swirl)
     ## M <- sweep(maM(swirl), 2, c(1,-1,1,-1), FUN="*")
     ## est <- maBayesian(M)

