Entry: alongChrom
Aliases: alongChrom buildACMainLabel doACImagePlot fixACPhysPoints getACGeneSyms limitACXRange cullACXPoints doACLocalPlot getACClosestPos getACPlotLabs scaleACData dispACXaxis doACMatPlot getACDataEnv getACStrandVals doACCumPlot emptyACPlot getACExprs highlightACDups
Keywords: utilities
Description: A function for plotting expression data from an exprset for a given chromosome.
URL: ../../../library/geneplotter/html/alongChrom.html

Entry: amplicon.plot
Aliases: amplicon.plot
Keywords: hplot 
Description: Create an amplicon plot
URL: ../../../library/geneplotter/html/amplicon.plot.html

Entry: cColor
Aliases: cColor
Keywords: utilities
Description: A function for marking specific probes on a cPlot.
URL: ../../../library/geneplotter/html/cColor.html

Entry: colorRampPalette
Aliases: colorRampPalette colorRamp
Keywords: color
Description: Extend a color palette to a color ramp
URL: ../../../library/geneplotter/html/colorRampPalette.html

Entry: cPlot
Aliases: cPlot
Keywords: utilities
Description: A plotting function for chromosomes.
URL: ../../../library/geneplotter/html/cPlot.html

Entry: cScale
Aliases: cScale
Keywords: utilities
Description: A function for mapping chromosome length to a number of points.
URL: ../../../library/geneplotter/html/cScale.html

Entry: GetColor
Aliases: GetColor dChip.colors greenred.colors
Keywords: manip 
Description: A function to get the Red-Blue color scheme used by dChip
URL: ../../../library/geneplotter/html/GetColor.html

Entry: identifyLines
Aliases: identifyLines
Keywords: utilities
Description: A function for identifying sample lines on an alongChrom() plot.
URL: ../../../library/geneplotter/html/identifyLines.html

Entry: make.chromOrd
Aliases: make.chromOrd
Keywords: utilities 
Description: Make a chromOrd object
URL: ../../../library/geneplotter/html/make.chromOrd.html
