annaffyPATH             package:annaffy             R Documentation

_S_u_b_s_e_t _o_f _a_n_n_o_t_a_t_i_o_n _d_a_t_a _f_i_l_e _f_o_r _P_A_T_H _i_n _t_h_e _h_g_u_9_5_a_v_2 _p_a_c_k_a_g_e

_D_e_s_c_r_i_p_t_i_o_n:

     This is an R environment object containing key and value pairs for
     the mappings between probe identifiers (key) and pathway
     identifiers defined by KEGG (value). Keys can be accessed using
     ls(name) and values using get(key, name) or multiget(keys, name).
     Values may be vectors of length 1 or greater depending on whether
     a given probe identifier can be associated with only one or more
     pathways. NA is assigned to probe identifiers that can not be 
     associated with any pathway at this time. Mappings between pathway
     ids to pathway names can be found in a separate data package named
     KEGG. Above mappings are obtained using data from LocusLink
     (www.ncbi.nlm.nih.gov/LocusLink) and KEGG (www.genome.ad.jp/kegg).

_D_e_t_a_i_l_s:

     Source data built: KEGG built: Release 26.0 (April 2003).<URL:
     ftp://ftp.genome.ad.jp/pub/kegg/pathways>. Package built: Thu May
     15 06:51:11 2003 Contains 250 randomly selected probes

_R_e_f_e_r_e_n_c_e_s:

     <URL: ftp://ftp.genome.ad.jp/pub/kegg/pathways>

_E_x_a_m_p_l_e_s:

     xx <- ls(env = annaffyPATH)
     get(xx[1], env = annaffyPATH)

