Entry: internal functions
Aliases: bg.correct.shift bg.correct.stretch
Keywords: internal
Description: Internal AffyExtensions functions
URL: ../../../library/affyPLM/html/affyPLM-internal.html

Entry: bg.correct.LESN
Aliases: bg.correct.LESN
Keywords: manip
Description: LESN - Low End Signal is Noise Background corrections
URL: ../../../library/affyPLM/html/bg.correct.LESN.html

Entry: fitPLM
Aliases: fitPLM
Keywords: manip
Description: Fit a Probe Level Model to Affymetrix Genechip Data.
URL: ../../../library/affyPLM/html/fitPLM.html

Entry: normalize.exprSet
Aliases: normalize.exprSet.quantiles normalize.exprSet.loess normalize.exprSet.contrasts normalize.exprSet.qspline normalize.exprSet.invariantset normalize.exprSet.scaling normalize.exprSet.methods
Keywords: manip
Description: Normalization applied to exprSets
URL: ../../../library/affyPLM/html/normalize.exprSet.html

Entry: normalize.quantiles.probeset
Aliases: normalize.AffyBatch.quantiles.probeset
Keywords: manip
Description: Quantile Normalization applied to probesets
URL: ../../../library/affyPLM/html/normalize.quantiles.probeset.html

Entry: normalize.scaling
Aliases: normalize.scaling normalize.AffyBatch.scaling
Keywords: manip
Description: Scaling normalization
URL: ../../../library/affyPLM/html/normalize.scaling.html

Entry: PLMset-class
Aliases: PLMset-class PLMset weights<- coefs coefs<- se se<- coefs.probe coefs.const se.probe se.const Mbox indexProbes coefs,PLMset-method weights<-,PLMset-method weights,PLMset-method coefs<-,PLMset-method se,PLMset-method se<-,PLMset-method coefs.probe,PLMset-method coefs.const,PLMset-method se.probe,PLMset-method se.const,PLMset-method Mbox,PLMset-method image,PLMset-method show,PLMset-method boxplot,PLMset-method getCdfInfo,PLMset-method indexProbes,PLMset,character-method cdfName,PLMset-method
Keywords: classes
Description: Class PLMset
URL: ../../../library/affyPLM/html/PLMset-class.html

Entry: threestep
Aliases: threestep
Keywords: manip
Description: Three Step expression measures
URL: ../../../library/affyPLM/html/threestep.html
