homoPS-class           package:AnnBuilder           R Documentation

_C_l_a_s_s "_h_o_m_o_P_S"

_D_e_s_c_r_i_p_t_i_o_n:

     A class to present data for HomologGene percent similarity data

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("homoPS", ...)'.

_S_l_o_t_s:

     '_p_s_O_r_g': Object of class '"character"' the scientific name of the
          organism of interest

     '_p_s_L_L': Object of class '"character"' the LocusLink id of the gene
          of interest

     '_p_s_T_y_p_e': Object of class '"character"' the type of similarity.
          Valid values include B - a recipiprocal best best between 3
          or more organisms, b - a reciprocal best match, and c - a
          curated homology relationship 

     '_p_s': Object of class '"numeric"' percent similarity value

     '_p_s_U_R_L': Object of class '"character"' the URL for curated
          homology relationship

_M_e_t_h_o_d_s:

     _p_s 'signature(object = "homoPS")': the get function for slot 'ps'

     _p_s_L_L 'signature(object = "homoPS")': the get function for slot
          'psLL'

     _p_s_O_r_g 'signature(object = "homoPS")': the get function for slot
          'psOrg'

     _p_s_T_y_p_e 'signature(object = "homoPS")': the get function for slot
          'psType'

     _p_s_U_R_L 'signature(object = "homoPS")': the get function for slot
          'psURL'

_N_o_t_e:

     This function is part of the Bioconductor project at Dana-Farber
     Cancer Institute to provide Bioinfomatics functionalities throug R

_A_u_t_h_o_r(_s):

     Jianhua Zhang

_R_e_f_e_r_e_n_c_e_s:

     <URL: ftp://ftp.ncbi.nih.gov/pub/HomoloGene/README>

_S_e_e _A_l_s_o:

     'homoPkgBuilder'

_E_x_a_m_p_l_e_s:

         new("homoPS", ps = 82.3, psLL = "2324853", psOrg = "Homo sapins",
     psType = "B", psURL = "")

