baitsOnly |
A function that filters proteins not sampled as baits. |
bpMatrix |
This function generates the Bait-Prey Matrix for an experiment |
collectBPStats |
This function enumerates the multiplicity of bait to prey occurances. |
collectIntactData |
A function that parses the Intact repository for bait to prey affiliation |
collectMembranePPI |
A function to collect the membrane bound protein protein interactions. |
createBPList |
A function to create the Bait to Prey association list. |
createTables |
A function to create a table of the various summary statistics for the Y2H experimental derived data. |
degreeStats |
A function to calculate the various degree statistics on the induced y2h-data derived directed graph. |
findComplexBP |
A function to intersect Y2H data with protein complex composition data |
genBPGraph |
A function to generate the Y2H induced adjcency matrix or its corresponding graph |
inNucleus |
A function to determine those proteins annotated by the nucleus GO term. |
intAct2Sys |
A function that maps the Intact ID's to the first YEAST systematic name using the YEAST package |
intActData |
A data set documenting the output of collectIntactData |
map2Systematic |
A function that maps the Intact ID's to Yeast Systematic Names if possible |
map2Systematic2 |
A secondary function that maps the Intact ID's to Yeast Systematic Names if possible |
membranePPI |
Binary Interactions for membrane bound proteins |
nucStat |
A function to restrict the indexing set of bait prey adjcency matrices |
ppipred |
Protein-protein predictions |
recipBP |
A function that returns all preys which were sampled as baits that also detected non-trivial preys. |
sWAC2Sys |
A data set that contains the translation between Swiss Acension Codes to Gene Systematic Names |
symInteraction |
A function that returns symmetric bait to prey interactions from the y2h experiments. |
tableList |
A list of tables for the downloaded and parsed xml files from the IntAct database |
y2h |
A data set documenting the bait to prey associations for the IntAct repository |
y2hSysGW |
A Binary Interaction List for Yeast Proteins via Systematic Names |