Y2H Statistical Package


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Documentation for package `y2hStat' version 1.2.0

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baitsOnly A function that filters proteins not sampled as baits.
bpMatrix This function generates the Bait-Prey Matrix for an experiment
collectBPStats This function enumerates the multiplicity of bait to prey occurances.
collectIntactData A function that parses the Intact repository for bait to prey affiliation
collectMembranePPI A function to collect the membrane bound protein protein interactions.
createBPList A function to create the Bait to Prey association list.
createTables A function to create a table of the various summary statistics for the Y2H experimental derived data.
degreeStats A function to calculate the various degree statistics on the induced y2h-data derived directed graph.
findComplexBP A function to intersect Y2H data with protein complex composition data
genBPGraph A function to generate the Y2H induced adjcency matrix or its corresponding graph
inNucleus A function to determine those proteins annotated by the nucleus GO term.
intAct2Sys A function that maps the Intact ID's to the first YEAST systematic name using the YEAST package
intActData A data set documenting the output of collectIntactData
map2Systematic A function that maps the Intact ID's to Yeast Systematic Names if possible
map2Systematic2 A secondary function that maps the Intact ID's to Yeast Systematic Names if possible
membranePPI Binary Interactions for membrane bound proteins
nucStat A function to restrict the indexing set of bait prey adjcency matrices
ppipred Protein-protein predictions
recipBP A function that returns all preys which were sampled as baits that also detected non-trivial preys.
sWAC2Sys A data set that contains the translation between Swiss Acension Codes to Gene Systematic Names
symInteraction A function that returns symmetric bait to prey interactions from the y2h experiments.
tableList A list of tables for the downloaded and parsed xml files from the IntAct database
y2h A data set documenting the bait to prey associations for the IntAct repository
y2hSysGW A Binary Interaction List for Yeast Proteins via Systematic Names