degreeStats {y2hStat} | R Documentation |
A function to calculate the various degree statistics on the
induced y2h-data derived directed graph.
Description
This function will create the adjacency matrix for each experimental
set of Y2H data set, and then it will calculate the various degree
statistics.
Usage
degreeStats(y2h)
Arguments
y2h |
A three tiered list. Names of the second tier corresponds to
ID of experiment. Names of the third tier should be the bait
proteins. The entries of the third tier are character vectors of
proteins detected as prey |
Value
degree |
A numeric vector of the out-degree for each bait protein |
min |
A numeric - the minimal degree |
max |
A numeric - the maximal degree |
med |
A numeric - the median degree |
mean |
A numeric - the mean degree |
Author(s)
T Chiang
Examples
data(y2hSysGW)
eg = y2hSysGW[3]
degreeStats(eg)
[Package
y2hStat version 1.2.0
Index]