degreeStats {y2hStat}R Documentation

A function to calculate the various degree statistics on the induced y2h-data derived directed graph.

Description

This function will create the adjacency matrix for each experimental set of Y2H data set, and then it will calculate the various degree statistics.

Usage

degreeStats(y2h)

Arguments

y2h A three tiered list. Names of the second tier corresponds to ID of experiment. Names of the third tier should be the bait proteins. The entries of the third tier are character vectors of proteins detected as prey

Value

degree A numeric vector of the out-degree for each bait protein
min A numeric - the minimal degree
max A numeric - the maximal degree
med A numeric - the median degree
mean A numeric - the mean degree

Author(s)

T Chiang

Examples

data(y2hSysGW)
eg = y2hSysGW[3]
degreeStats(eg)

[Package y2hStat version 1.2.0 Index]