createTables {y2hStat}R Documentation

A function to create a table of the various summary statistics for the Y2H experimental derived data.

Description

This function takes in a three tiered list. The top tier is the main list which is passed in by the user. The second tier set of lists should be named or referenced by experimentors. The third tier is a list of bait to prey associations. The names in the third tier of the list are those proteins sampled as baits, and the entries are character vectors of proteins detected as prey. From this data, the function generates a table of various summary statistics.

Usage

createTables(y2h)

Arguments

y2h A three tiered list. Names of the second tier corresponds to ID of experiment. Names of the third tier should be the bait proteins. The entries of the third tier are character vectors of proteins detected as prey

Value

A table of statistics:

Column1 Number of baits
Column2 Number of interactions experiment wide
Column3 Ratio of baits to interactions
Column4 Min Degree
Column5 Max Degree
Column6 Median Degree
Column7 Mean Degree

Author(s)

T Chiang

Examples

data(y2hSysGW)
eg = y2hSysGW[3]
createTables(eg)

[Package y2hStat version 1.2.0 Index]