Analysis of cell-based screens


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Documentation for package `cellHTS' version 1.2.0

User Guides and Package Vignettes

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Help Pages

annotate Annotates the gene IDs of a given cellHTS object
bdgpbiomart Dataset with annotation of CG identifiers
configure Configures the plates and plate result files
imageScreen Experiment-wide quality control plot of a cellHTS object
lines.ROC Creates an object of class "ROC" which can be plotted as a ROC curve
normalizePlateMedian Median normalization of the data and data transformation
normalizeRatio Normalization of two-color data and data transformation
oneRowPerId Rearrange dataframe entries such that there is exactly one row per ID.
plot.ROC Creates an object of class "ROC" which can be plotted as a ROC curve
print.cellHTS Printing cellHTS objects
readPlateData Read a collection of plate reader data files
ROC Creates an object of class "ROC" which can be plotted as a ROC curve
summarizeReplicates Summarizes between normalized replicate values given in a cellHTS object, obtaining a single z-score for each probe
writeReport Create a directory with HTML pages of linked tables and plots documenting the contents of a cellHTS object