annotate |
Annotates the gene IDs of a given cellHTS object |
bdgpbiomart |
Dataset with annotation of CG identifiers |
configure |
Configures the plates and plate result files |
imageScreen |
Experiment-wide quality control plot of a cellHTS object |
lines.ROC |
Creates an object of class "ROC" which can be plotted as a ROC curve |
normalizePlateMedian |
Median normalization of the data and data transformation |
normalizeRatio |
Normalization of two-color data and data transformation |
oneRowPerId |
Rearrange dataframe entries such that there is exactly one row per ID. |
plot.ROC |
Creates an object of class "ROC" which can be plotted as a ROC curve |
print.cellHTS |
Printing cellHTS objects |
readPlateData |
Read a collection of plate reader data files |
ROC |
Creates an object of class "ROC" which can be plotted as a ROC curve |
summarizeReplicates |
Summarizes between normalized replicate values given in a cellHTS object, obtaining a single z-score for each probe |
writeReport |
Create a directory with HTML pages of linked tables and plots documenting the contents of a cellHTS object |