Functions useful for those doing repetitive analyses with Affymetrix GeneChips.


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Documentation for package `affycoretools' version 1.4.0

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affystart Pre-processing for Affymetrix Data
convert.back A Function to convert M and A values back to R and G values
foldFilt Output Fold Change Data
hyperG2annaffy HTML tables from GOIDs
limma2annaffy Function to Create HTML Tables from limma Objects
plotDeg Functions to Plot Density and RNA Degradation Plots
plotHist Functions to Plot Density and RNA Degradation Plots
plotma A Function to Make an MA Plot
plotPCA A Function to Make a PCA Plot from an exprSet
probes2table Convert Affy Probe ids to Annotated HTML Table
vennCounts2 Compute Counts for Venn Diagram
vennSelect Select and Output Genelists Based on Venn Diagrams