affystart |
Pre-processing for Affymetrix Data |
convert.back |
A Function to convert M and A values back to R and G values |
foldFilt |
Output Fold Change Data |
hyperG2annaffy |
HTML tables from GOIDs |
limma2annaffy |
Function to Create HTML Tables from limma Objects |
plotDeg |
Functions to Plot Density and RNA Degradation Plots |
plotHist |
Functions to Plot Density and RNA Degradation Plots |
plotma |
A Function to Make an MA Plot |
plotPCA |
A Function to Make a PCA Plot from an exprSet |
probes2table |
Convert Affy Probe ids to Annotated HTML Table |
vennCounts2 |
Compute Counts for Venn Diagram |
vennSelect |
Select and Output Genelists Based on Venn Diagrams |