specL - Prepare Peptide Spectrum Matches for Use in Targeted Proteomics


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Documentation for package ‘specL’ version 1.0.0

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annotateProteinID annotateProteinID
BiblioSpec BiblioSpec Reader
bibliospec BiblioSpec Reader
genSwathIonLib Spectrum library generator for SWATH analysis
ionlibrary Class '"specLSet"'
ionlibrary-method Class '"specLSet"'
iRT iRT peptides - independent retention time peptides
irt iRT peptides - independent retention time peptides
iRTpeptides iRT peptides - independent retention time peptides
MRM Spectrum library generator for SWATH analysis
peptideStd Peptide standard
peptideStd.redundant Peptide standard
plot Class '"specLSet"'
plot,specL-methods Method for Function 'plot' in Package 'specL'
plot,specLSet-methods Method for Function 'plot' in Package 'specL'
plot-method Method for Function 'plot' in Package 'specL'
plot-method Class '"specL"'
plot-method Class '"specLSet"'
plot-methods Method for Function 'plot' in Package 'specL'
read.bibliospec BiblioSpec Reader
rt.input Class '"specLSet"'
rt.input-method Class '"specLSet"'
rt.normalized Class '"specLSet"'
rt.normalized-method Class '"specLSet"'
show-method Methods for Function 'show' in Package 'specL' ~~
show-method Class '"specL"'
show-method Class '"specLSet"'
show-methods Methods for Function 'show' in Package 'specL' ~~
Skyline BiblioSpec Reader
skyline BiblioSpec Reader
specL Spectrum library generator for SWATH analysis
specL-class Class '"specL"'
specLSet-class Class '"specLSet"'
SWATH Spectrum library generator for SWATH analysis
swath Spectrum library generator for SWATH analysis
write.Spectronaut Methods for Function 'write.Spectronaut' in Package 'specL'
write.Spectronaut,specL-methods Methods for Function 'write.Spectronaut' in Package 'specL'
write.Spectronaut,specLSet-methods Methods for Function 'write.Spectronaut' in Package 'specL'
write.Spectronaut-method Class '"specL"'
write.Spectronaut-method Class '"specLSet"'
write.Spectronaut-method Methods for Function 'write.Spectronaut' in Package 'specL'