Package: VariantFiltering
Type: Package
Title: Filtering of coding and non-coding genetic variants
Description: Filter genetic variants using different criteria such as
        inheritance model, amino acid change consequence, minimum
        allele frequencies across human populations, splice site
        strength, conservation, etc.
Version: 1.2.14
Author: Dei M. Elurbe, Robert Castelo
Maintainer: Robert Castelo <robert.castelo@upf.edu>
Depends: R (>= 3.0.0), methods, BiocGenerics (>= 0.11.3)
Imports: DBI, RSQLite (>= 1.0.0), Biobase, S4Vectors, IRanges (>=
        1.99.17), AnnotationDbi, BiocParallel, Biostrings (>= 2.33.11),
        GenomeInfoDb (>= 1.2.2), GenomicRanges (>= 1.17.19),
        GenomicFeatures, Rsamtools (>= 1.17.8), BSgenome,
        BSgenome.Hsapiens.UCSC.hg19, VariantAnnotation (>= 1.12.2),
        shiny
Suggests: BiocStyle, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene,
        SNPlocs.Hsapiens.dbSNP.20120608,
        MafDb.ALL.wgs.phase1.release.v3.20101123,
        MafDb.ESP6500SI.V2.SSA137.dbSNP138, phastCons100way.UCSC.hg19,
        PolyPhen.Hsapiens.dbSNP131, SIFT.Hsapiens.dbSNP137
LinkingTo: S4Vectors, IRanges, XVector, Biostrings
License: Artistic-2.0
LazyData: yes
URL: https://github.com/rcastelo/VariantFiltering/issues
biocViews: Genetics, Homo_sapiens, Annotation, SNP, Sequencing,
        HighThroughputSequencing
Packaged: 2015-01-27 04:24:26 UTC; biocbuild
Built: R 3.1.2; x86_64-apple-darwin13.4.0; 2015-01-27 12:28:55 UTC; unix
