statistical analysis and visulization of functional profiles for genes and gene clusters


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Documentation for package ‘clusterProfiler’ version 1.2.1

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clusterProfiler-package statistical analysis and visulization of functional profiles for genes and...
clusterProfiler statistical analysis and visulization of functional profiles for genes and...
compareCluster Compare gene clusters functional profile...
compareClusterResult-class Class "compareClusterResult"...
enrichGO GO Enrichment Analysis of a gene set.
enrichGOResult-class Class "enrichGOResult"...
enrichKEGG KEGG Enrichment Analysis of a gene set.
enrichKEGGResult-class Class "enrichKEGGResult"...
gcSample Datasets...
geneID2geneName convert gene IDs to gene Names
getGO2ExtID query genes annotated by given GOIDs
getGOLevel get GOIDs at a specific level
getRatio getRatio
GO2Term Mapping GOIDs to GO Terms
groupGO Functional Profile of a gene set at specific GO level.
groupGOResult-class Class "groupGOResult"...
HyperG hypergeometric test
path2Name convert KEGG pathway ID to pathway Name
plot plot method
plot-method Class "compareClusterResult"...
plot-method Class "enrichGOResult"...
plot-method Class "enrichKEGGResult"...
plot-method Class "groupGOResult"...
plotting.barplot internal function of barplot
plotting.clusterProfile plotting-clusterProfile
pModify changing title and font size
show show method
show-method Class "compareClusterResult"...
show-method Class "enrichGOResult"...
show-method Class "enrichKEGGResult"...
show-method Class "groupGOResult"...
summary summary method
summary-method Class "compareClusterResult"...
summary-method Class "enrichGOResult"...
summary-method Class "enrichKEGGResult"...
summary-method Class "groupGOResult"...