biovizBase-package | biovizBase is a package which provides utilities and color scheme... |
addSteppings | Adding disjoint levels to a GenomicRanges object |
addSteppings-method | Adding disjoint levels to a GenomicRanges object |
biovizBase | biovizBase is a package which provides utilities and color scheme... |
blind.pal.info | Color blind safe palette generator |
brewer.pal.blind.info | Color blind safe palette generator |
colorBlindSafePal | Color blind safe palette generator |
containLetters | Checking if string contains letters or not |
darned_hg19_subset500 | Subset of RNA editing sites in hg19... |
dichromat.pal.blind.info | Color blind safe palette generator |
GCcontent | GC content computation for BSgenome |
genBlindPalInfo | Color blind safe palette generator |
genBrewerBlindPalInfo | Color blind safe palette generator |
genDichromatPalInfo | Color blind safe palette generator |
genesymbol | Gene symbols with position... |
getBioColor | Color scheme getter for biological data |
getIdeogram | Get ideogram. |
hg19Ideogram | Hg19 ideogram without cytoband information... |
hg19IdeogramCyto | Hg19 ideogram with cytoband information... |
isIdeogram | Ideogram checking |
isJunctionRead | Utils for Splicing Summary |
isMatchedWithModel | Utils for Splicing Summary |
isSimpleIdeogram | Simple ideogram checking |
maxGap | Estimated max gaps |
maxGap-method | Estimated max gaps |
pileupAsGRanges | Summarize reads for certain region |
pileupGRangesAsVariantTable | Mismatch summary |
plotColorLegend | Show colors |
showColor | Show colors |
shrinkageFun | Shrinkage function |
shrinkageFun-method | Shrinkage function |
transformGRangesForEvenSpace | Transform GRanges with New Coordinates |
transformGRangesToDfWithTicks | transformGRangesToDfWithTicks |