Basic graphic utilities for visualization of genomic data.


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Documentation for package ‘biovizBase’ version 1.0.4

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biovizBase-package biovizBase is a package which provides utilities and color scheme...
addSteppings Adding disjoint levels to a GenomicRanges object
addSteppings-method Adding disjoint levels to a GenomicRanges object
biovizBase biovizBase is a package which provides utilities and color scheme...
blind.pal.info Color blind safe palette generator
brewer.pal.blind.info Color blind safe palette generator
colorBlindSafePal Color blind safe palette generator
containLetters Checking if string contains letters or not
darned_hg19_subset500 Subset of RNA editing sites in hg19...
dichromat.pal.blind.info Color blind safe palette generator
GCcontent GC content computation for BSgenome
genBlindPalInfo Color blind safe palette generator
genBrewerBlindPalInfo Color blind safe palette generator
genDichromatPalInfo Color blind safe palette generator
genesymbol Gene symbols with position...
getBioColor Color scheme getter for biological data
getIdeogram Get ideogram.
hg19Ideogram Hg19 ideogram without cytoband information...
hg19IdeogramCyto Hg19 ideogram with cytoband information...
isIdeogram Ideogram checking
isJunctionRead Utils for Splicing Summary
isMatchedWithModel Utils for Splicing Summary
isSimpleIdeogram Simple ideogram checking
maxGap Estimated max gaps
maxGap-method Estimated max gaps
pileupAsGRanges Summarize reads for certain region
pileupGRangesAsVariantTable Mismatch summary
plotColorLegend Show colors
showColor Show colors
shrinkageFun Shrinkage function
shrinkageFun-method Shrinkage function
transformGRangesForEvenSpace Transform GRanges with New Coordinates
transformGRangesToDfWithTicks transformGRangesToDfWithTicks