Functions for normalisation of RT-qPCR data


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Documentation for package ‘NormqPCR’ version 1.0.0

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NormqPCR-package Functions for normalisation of RT-qPCR data.
Bladder Data set of Andersen et al (2004)
Bladder.qPCRBatch Data set of Andersen et al (2004)
BladderRepro Data set of Andersen et al (2004)
BladderRepro.qPCRBatch Data set of Andersen et al (2004)
Colon Data set of Andersen et al (2004)
Colon.qPCRBatch Data set of Andersen et al (2004)
combineTechReps Combines Technical Replicates
combineTechReps-method Combines Technical Replicates
deltaCt Perform normalization with a given housekeeping gene
deltaCt-method Perform normalization with a given housekeeping gene
deltaCt-methods Perform normalization with a given housekeeping gene
deltaDeltaCt Perform normalization and differential expression with given housekeeping gene
deltaDeltaCt-method Perform normalization and differential expression with given housekeeping gene
deltaDeltaCt-methods Perform normalization and differential expression with given housekeeping gene
geNorm Data set of Vandesompele et al (2002)
geNorm.qPCRBatch Data set of Vandesompele et al (2002)
geomMean Geometric Mean
makeAllNAs Make all Ct values NA
makeAllNAs-method Make all Ct values NA
NormqPCR Functions for normalisation of RT-qPCR data.
replaceAboveCutOff Replace Ct values with new value
replaceAboveCutOff-method Replace Ct values with new value
replaceNAs Replace NAs with a given value
replaceNAs-method Replace NAs with a given value
selectHKs Selection of reference/housekeeping genes
selectHKs-method Selection of reference/housekeeping genes
selectHKs-methods Selection of reference/housekeeping genes
stabMeasureM Gene expression stability value M
stabMeasureRho Gene expression stability value rho
stabMeasureRho-method Gene expression stability value rho
stabMeasureRho-methods Gene expression stability value rho