GGbase-package |
GGbase Package Overview |
chrnum |
Class "genesym" and other casting classes |
chrnum-class |
Class "genesym" and other casting classes |
chrnum-method |
Class "genesym" and other casting classes |
cnumOrMissing |
Class "genesym" and other casting classes |
cnumOrMissing-class |
Class "genesym" and other casting classes |
coerce-method |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
combine-method |
Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
combine-method |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
cwSnpScreenResult-class |
Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
exprs-method |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
featureFilter |
remove unannotated or undesired features from an smlSet instance |
filteredGwSnpScreenResult-class |
Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
filteredMultiGwSnpScreenResult-class |
Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
genesym |
Class "genesym" and other casting classes |
genesym-class |
Class "genesym" and other casting classes |
genesym-method |
Class "genesym" and other casting classes |
getAlleles |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
getAlleles-method |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
getSS |
construct a small-footprint smlSet instance from a specially structured package |
GGbase |
GGbase Package Overview |
GTFfilter |
restrict SNP in an smlSet to range of minor allele frequencies (MAF) or genotype frequencies (GTF) |
gwSnpScreenResult |
Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
gwSnpScreenResult-class |
Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
MAFfilter |
restrict SNP in an smlSet to range of minor allele frequencies (MAF) or genotype frequencies (GTF) |
make_smlSet |
create an smlSet instance from components |
multiCisTestResult-class |
Class "multiCisTestResult" |
multiGwSnpScreenResult-class |
Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
nsFilter-method |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
phenoVar |
Class "genesym" and other casting classes |
phenoVar-class |
Class "genesym" and other casting classes |
phenoVar-method |
Class "genesym" and other casting classes |
plot-method |
Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
plot_EvG |
formal method for visualizing expression distributions vs genotype |
plot_EvG-method |
formal method for visualizing expression distributions vs genotype |
plot_EvG-methods |
formal method for visualizing expression distributions vs genotype |
plot_EvG2 |
formal method for visualizing expression distributions vs genotype |
plot_EvG2-method |
formal method for visualizing expression distributions vs genotype |
probeId |
Class "genesym" and other casting classes |
probeId-class |
Class "genesym" and other casting classes |
probeId-method |
Class "genesym" and other casting classes |
rsid |
Class "genesym" and other casting classes |
rsid-class |
Class "genesym" and other casting classes |
rsid-method |
Class "genesym" and other casting classes |
SessionInfo-class |
Class "SessionInfo" - objects to help stamp an output with information on session state |
show-method |
Class "genesym" and other casting classes |
show-method |
Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
show-method |
Class "multiCisTestResult" |
show-method |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
show-method |
class and function to summarize frequency information on genotypes in an smlSet |
smlEnv |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
smlEnv-method |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
smList |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
smList-method |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
smlSet |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
smlSet-class |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
smlSet.example |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
smlSummary |
class and function to summarize frequency information on genotypes in an smlSet |
smlSummary-class |
class and function to summarize frequency information on genotypes in an smlSet |
snpdepth |
Class "genesym" and other casting classes |
snpdepth-class |
Class "genesym" and other casting classes |
snpNames |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
snpNames-method |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
snps |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
snps-method |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
updateObject-method |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
[-method |
Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
[-method |
Documentation on S4 class "smlSet" an eSet-derived container for SnpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |